Package: BOLDNODE 1.0.0
BOLDNODE: Search and Explore BOLD Data Packages Efficiently
Provides efficient tools for exploring and transforming the Barcode of Life Data Systems (BOLD) data packages on local machines. It enables fast local querying of the data packages without relying on live API calls. Results can be easily converted into formats compatible with widely used R packages and third party tools.
Authors:
BOLDNODE_1.0.0.tar.gz
BOLDNODE_1.0.0.zip(r-4.7-any)BOLDNODE_1.0.0.zip(r-4.6-any)BOLDNODE_1.0.0.zip(r-4.5-any)
BOLDNODE_1.0.0.tgz(r-4.6-any)BOLDNODE_1.0.0.tgz(r-4.5-any)
BOLDNODE_1.0.0.tar.gz(r-4.7-any)BOLDNODE_1.0.0.tar.gz(r-4.6-any)
BOLDNODE_1.0.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
BOLDNODE/json (API)
| # Install 'BOLDNODE' in R: |
| install.packages('BOLDNODE', repos = c('https://sameerpadhye.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/sameerpadhye/boldnode/issues
Last updated from:edb4bdf06c. Checks:7 WARNING, 1 ERROR, 1 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | WARNING | 151 | ||
| source / vignettes | ERROR | 245 | ||
| linux-release | WARNING | 147 | ||
| macos-release | WARNING | 178 | ||
| macos-oldrel | WARNING | 225 | ||
| windows-devel | WARNING | 109 | ||
| windows-release | WARNING | 88 | ||
| windows-oldrel | WARNING | 112 | ||
| wasm-release | OK | 150 |
Exports:bcdm_field_namesbcdm_field_valuesbcdm_to_dnastringsetbcdm_to_dwcbcdm_to_fastabcdm_to_occmatrixbcdm_to_sfbold_parquet_searchbold_search_collectget_bin_consensusget_bin_repsget_concise_summary
Dependencies:blobclassclassIntclicpp11data.tableDBIdbplyrdigestdplyrduckdbe1071genericsglueKernSmoothlifecyclemagrittrpillarpkgconfigprogressrproxypurrrR6Rcpprlangs2sfstringistringrtibbletidyrtidyselectunitsutf8vctrswithrwk
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Retrieve BCDM field names and descriptions | bcdm_field_names |
| Extract unique values from BCDM fields in the BOLD data package | bcdm_field_values |
| Convert the BOLD parquet search into a DNAStringSet object | bcdm_to_dnastringset |
| Convert the BOLD parquet search in to a Darwin Core (DwC) format data model | bcdm_to_dwc |
| Export the BOLD parquet search to FASTA format | bcdm_to_fasta |
| Convert the BOLD parquet search into an occurrence matrix | bcdm_to_occmatrix |
| Convert the BOLD parquet search into a simple features dataframe | bcdm_to_sf |
| Search records within a BOLD parquet data package | bold_parquet_search |
| Collect and export parquet search results | bold_search_collect |
| Compute consensus BIN taxonomy | get_bin_consensus |
| Select representative records by BIN | get_bin_reps |
| Generate a concise summary of the search results | get_concise_summary |